Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PCPG | rs2490983 | chr13:114166656 | T/A | 3.87E-12 | 178 | 24.17 | 29.95 | 3.32 | KM Plot |
| PCPG | rs2490984 | chr13:114166776 | C/T | 3.87E-12 | 178 | 24.17 | 29.95 | 3.32 | KM Plot |
| PCPG | rs2519717 | chr17:3225814 | C/T | 0.000226 | 171 | 18.1 | 25.87 | 26.88 | KM Plot |
| PCPG | rs2532486 | chr12:6582699 | T/A | 0.000279 | 177 | 19.3 | 25.97 | 25.17 | KM Plot |
| PCPG | rs2532488 | chr12:6592568 | A/G | 0.000283 | 176 | 16.3 | 26.27 | 25.42 | KM Plot |
| PCPG | rs2532491 | chr12:6576859 | T/C | 0.000279 | 176 | 19.3 | 26.27 | 25.17 | KM Plot |
| PCPG | rs2532495 | chr12:6569062 | A/G | 0.000285 | 173 | 19.3 | 25.4 | 25.87 | KM Plot |
| PCPG | rs2532498 | chr12:6563698 | C/G | 0.000285 | 173 | 19.3 | 25.4 | 25.87 | KM Plot |
| PCPG | rs2532499 | chr12:6563255 | C/G | 0.000285 | 173 | 19.3 | 25.4 | 25.87 | KM Plot |
| PCPG | rs2532500 | chr12:6562810 | A/G | 0.000285 | 173 | 19.3 | 25.4 | 25.87 | KM Plot |
| PCPG | rs2532501 | chr12:6562753 | A/G | 0.000285 | 173 | 19.3 | 25.4 | 25.87 | KM Plot |
| PCPG | rs2532513 | chr12:6589171 | C/T | 0.000283 | 176 | 16.3 | 26.27 | 25.42 | KM Plot |
| PCPG | rs2534698 | chr12:6562931 | T/C | 0.000285 | 173 | 19.3 | 25.4 | 25.87 | KM Plot |
| PCPG | rs2534710 | chr12:6570163 | C/T | 0.000306 | 172 | 19.3 | 25.2 | 25.87 | KM Plot |
| PCPG | rs2534712 | chr12:6572549 | C/T | 0.000263 | 174 | 19.3 | 25.97 | 25.77 | KM Plot |